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Anti-Histone H2A.Z antibody - ChIP Grade (ab4174)

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Overview

Product name

Anti-Histone H2A.Z antibody - ChIP Grade
See all Histone H2A.Z products (8) ...

Description

Rabbit polyclonal to Histone H2A.Z - ChIP Grade

Specificity

This antibody is specific for H2A.Z in Western blotting. However, in AUT gels, there is significant cross-reaction to H1 and H5, which is never seen in standard westerns. We do not understand where this cross-reactivity comes from and why it is only seen in AUT gels.

Tested applications

ICC/IF, ChIP, IHC-P, IP, CHIPseq, WBmore details

Cross reactivity

Reacts with

Mouse, Rat, Rabbit, Chicken, Cow, Human, Zebrafish

Predicted to work with

Sheep, Xenopus laevis

Immunogen

Synthetic peptide conjugated to KLH derived from within residues 100 to the C-terminus of Human Histone H2A.Z.

(Peptide available as ab116 81.)

Positive control

This antibody gave a positive control in the following lysate: Calf thymus histone lysate; HeLa whole cell. This antibody gave a positive control in the following mouse lysates: NIH 3T3 (Mouse embryonic fibroblast cell line) Whole Cell MEF1 (Mouse embryonic fibroblast cell line) Whole Cell This antibody gave a positive control in the following rat lysate: PC12 (Rat adrenal pheochromocytoma cell line) Whole Cell

Properties

Form

Liquid

Storage instructions

Shipped at 4°C. Upon delivery aliquot and store at -20°C or -80°C. Avoid repeated freeze / thaw cycles.

Storage buffer

Preservative: 0.02% Sodium Azide
Constituents: 1% BSA, PBS, pH 7.4

Concentration

Concentration information loading...

Purity

Immunogen affinity purified

Clonality

Polyclonal

Isotype

IgG

  • Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174)Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174) image (enlarge)

  • Western blot - Histone H2A.Z antibody - ChIP Grade (ab4174)Western blot - Histone H2A.Z antibody - ChIP Grade (ab4174) image (enlarge)

  • ChIP - Histone H2A.Z antibody - ChIP Grade (ab4174)ChIP - Histone H2A.Z antibody - ChIP Grade (ab4174) image (enlarge)

Applications

Show applications key

Our Abpromise guarantee covers the use of ab4174 in the following tested applications.

The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user.

Target

Relevance

The conserved histone variant H2A.Z functions in euchromatin to antagonize the spread of heterochromatin. The mechanism by which histone H2A is replaced by H2A.Z in the nucleosome is unknown. However, the recently isolated SWR1 complex catalyzes an ATP-dependent histone exchange with specificity for the histone variant H2A.Z. This provides a new theme in chromatin remodeling mechanisms and an explanation of how histone variants are incorporated into the nucleosome outside of S phase. In connection with the isolation of histone variant specific chaperone complexes, we are beginning to see the mechanisms that mix the histone octamer with intriguing implications for epigenetic inheritance. During early mammalian development H2A.Z plays an essential, but unknown, function(s). It has been shown (Rangasamy et al., 2003) that undifferentiated mouse cells of the inner cell mass lack H2A.Z, but upon differentiation H2A.Z expression is switched on. Strikingly, H2A.Z is first targeted to pericentric hetero chromatin and then to other regions of the nucleus, but is excluded from the inactive X chromosome and the nucleolus.

Cellular localization

Nuclear

Alternative names

  • H2A histone family member Z antibody
  • H2A.z antibody
  • H2A/z antibody
  • H2AFZ antibody
  • H2AZ antibody
  • MGC117173 antibody
see all

Anti-Histone H2A.Z antibody - ChIP Grade images:

  Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174)

Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174)

The staining has been done on mouse embryonic cells. The fixation is 2% PFA, and permeabilization is PBS 0.5% triton BSA. The dilution used was 1 in 100 (but it could be used at 1/200 to1/300)

Red  = H2A.Z
Blue  = toto3 for the DNA

  Western blot - Histone H2A.Z antibody - ChIP Grade (ab4174)

Western blot - Histone H2A.Z antibody - ChIP Grade (ab4174)

Lanes 1 - 2 : Anti-Histone H2A.Z antibody - ChIP Grade (ab4174) at 1/500 dilution
Lanes 3 - 4 : Anti-Histone H2A.Z antibody - ChIP Grade (ab4174) at 1/1000 dilution

Lane 1 : Calf thymus histone lysate
Lane 2 : Calf thymus histone lysate with Histone H2A.Z peptide (ab11681) at 1 µg/ml
Lane 3 : Calf thymus histone lysate
Lane 4 : Calf thymus histone lysate with Histone H2A.Z peptide (ab11681) at 1 µg/ml

Secondary
Goat polyclonal Secondary Antibody to Rabbit IgG - H&L (HRP) (ab6721) at 1/5000 dilution

Performed under reducing conditions.

Predicted band size : 13.4 kDa
Observed band size : 15 kDa (why is the actual band size different from the predicted?)

  ChIP - Histone H2A.Z antibody - ChIP Grade (ab4174)

ChIP - Histone H2A.Z antibody - ChIP Grade (ab4174)

Chromatin was prepared from Hela cells according to the Abcam X-ChIP protocol. Cells were fixed with formaldehyde for 10 min. The  ChIP was performed with 25 µg of chromatin, 2 µg of  ab4174 (blue), and 20 µl of Protein A/G sepharose beads. No antibody was added to the beads control (yellow). The immunoprecipitated DNA was quantified by real time PCR (Taqman approach for active and inactive loci, Sybr green approach for heterochromatic loci). Primers and probes are located in the first kb of the transcribed region.

  Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Histone H2A.Z antibody - ChIP Grade (ab4174)

Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Histone H2A.Z antibody - ChIP Grade (ab4174)

IHC image of Histone H2A.Z staining in human breast carcinoma FFPE section, performed on a BondTM system using the standard protocol F. The section was pre-treated using heat mediated antigen retrieval with sodium citrate buffer (pH6, epitope retrieval solution 1) for 20 mins. The section was then incubated with ab4174, 5µg/ml, for 8 mins at room temperature and detected using an HRP conjugated compact polymer system. DAB was used as the chromogen. The section was then counterstained with haematoxylin and mounted with DPX.

  Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174)

Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174)

This image was kindly supplied as part of the review submitted by Dr Geza Fejes-Toth.

  Western blot - Histone H2A.Z antibody - ChIP Grade (ab4174)

Western blot - Histone H2A.Z antibody - ChIP Grade (ab4174)

All lanes : Anti-Histone H2A.Z antibody - ChIP Grade (ab4174) at 1 µg/ml

Lane 1 : Calf Thymus Histone Preparation Nuclear Lysate at 0.5 µg
Lane 2 : HeLa (Human epithelial carcinoma cell line) Whole Cell Lysate at 10 µg
Lane 3 : NIH 3T3 (Mouse embryonic fibroblast cell line) Whole Cell Lysate at 10 µg
Lane 4 : PC12 (Rat adrenal pheochromocytoma cell line) Whole Cell Lysate at 10 µg

Secondary
Goat polyclonal to Rabbit IgG - H&L - Pre-Adsorbed (HRP) (ab65484) at 1/3000 dilution
developed using the ECL technique

Performed under reducing conditions.

Predicted band size : 13.4 kDa
Observed band size : 16 kDa (why is the actual band size different from the predicted?)
Additional bands at : 36 kDa. We are unsure as to the identity of these extra bands.

Exposure time : 3 minutes

  Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174)

Immunocytochemistry/ Immunofluorescence - Histone H2A.Z antibody - ChIP Grade (ab4174)

ICC/IF image of ab4174 stained HepG2 cells. The cells were 100% methanol fixed (5 min) and then incubated in 1%BSA / 10% normal goat serum / 0.3M glycine in 0.1% PBS-Tween for 1h to permeabilise the cells and block non-specific protein-protein interactions. The cells were then incubated with the antibody (ab4174, 5µg/ml) overnight at +4°C. The secondary antibody (green) was DyLight® 488 goat anti-rabbit IgG - H&L, pre-adsorbed (ab96899) used at a 1/250 dilution for 1h. Alexa Fluor® 594 WGA was used to label plasma membranes (red) at a 1/200 dilution for 1h. DAPI was used to stain the cell nuclei (blue) at a concentration of 1.43µM.

References for Anti-Histone H2A.Z antibody - ChIP Grade (ab4174)

This product has been referenced in:

  • Bönisch C  et al. H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization. Nucleic Acids Res : (2012).Read more (PubMed: 22467210) »
  • Papamichos-Chronakis M  et al. Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity. Cell 144:200-13 (2011). WB, ChIP; Saccharomyces cerevisiae.Read more (PubMed: 21241891) »

See all 23 publications for this product

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Please note: All products are "FOR RESEARCH USE ONLY AND ARE NOT INTENDED FOR DIAGNOSTIC OR THERAPEUTIC USE"