Anti-5-methylcytosine (5-mC) antibody [33D3] (ab10805)
- Datasheet
- References (58)
- Protocols
Overview
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Product nameAnti-5-methylcytosine (5-mC) antibody [33D3]
See all 5-methylcytosine (5-mC) primary antibodies -
DescriptionMouse monoclonal [33D3] to 5-methylcytosine (5-mC)
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Host speciesMouse
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SpecificityClone 33D3 has been developed to discriminate between the modified base 5-MeCyd and the normal counterpart cytosine.
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Tested applicationsSuitable for: IHC-P, MeDIP, ChIP, IP, Southern Blot, Dot blot, Flow Cyt, IHC-Frmore details
Unsuitable for: ICC -
Immunogen
Chemical/ Small Molecule corresponding to 5-methylcytosine (5-mC).
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General notes
Storage in frost-free freezers is not recommended. Should this product contain a precipitate microcentrifugation before use.While older lots have performed well in ICC, we have received inconsistent results with the latest lots. Unfortunately, we can no longer guarantee this antibody for use in ICC.
Properties
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FormLiquid
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Storage instructionsShipped at 4°C. Store at +4°C short term (1-2 weeks). Upon delivery aliquot. Store at -20°C or -80°C. Avoid freeze / thaw cycle.
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Storage bufferpH: 7.4
Preservative: 0.01% Thimerosal (merthiolate)
Constituent: 99.99% PBS -
Concentration information loading... -
PurityProtein A purified
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Primary antibody notesAb10805 recognises the modified base 5-methylcytidine found in DNA of plants and vertebrates. DNA methylation is a DNA modification process, which is involved in the control of gene expression. Reports suggest that in tumours, DNA is frequently globally hypomethylated compared to the DNA from normal tissue.
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ClonalityMonoclonal
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Clone number33D3
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MyelomaSp2/0-Ag14
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IsotypeIgG1
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Light chain typekappa
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Research areas
Associated products
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ChIP Related Products
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Compatible Secondaries
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Immunohistochemistry kits
Applications
Our Abpromise guarantee covers the use of ab10805 in the following tested applications.
The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user.
| Application | Abreviews | Notes |
|---|---|---|
| IHC-P | Use at an assay dependent concentration. Perform heat mediated antigen retrieval before commencing with IHC staining protocol. | |
| MeDIP | Use at an assay dependent concentration. PubMed: 17845077Used 5ul in 200ul reaction with 2ug digested genomic DNA from Drosophila. | |
| ChIP | Use at an assay dependent concentration. | |
| IP | Use at an assay dependent concentration. | |
| Southern Blot | 1/200. | |
| Dot blot | Use at an assay dependent concentration. PubMed: 24386123 | |
| Flow Cyt | Use at an assay dependent concentration. Use 10ul of working dilution to label 1000000 cells in 100ul. (see Habib, M. et al. (1999)). |
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| IHC-Fr | Use at an assay dependent concentration. |
Target
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FormThe native context of double-stranded DNA may obstruct antibody binding to 5-methylcytosine. For successful detection of 5-methylcytosine, we recommend that the DNA is denatured to make the nucleotides accessible for the antibody. Denaturing methods vary depending on each application.
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Alternative names
- 5 m C antibody
- 5 mC antibody
- 5 me C antibody
see all
Images
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![Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-5-methylcytosine (5-mC) antibody [33D3] (ab10805)](https://www.abcam.com/ps/products/10/ab10805/Images/ab10805_review_13478.jpg)
Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-5-methylcytosine (5-mC) antibody [33D3] (ab10805)This image is courtesy of an Abreview submitted by Ms Sara Maj Wätjen Hyldigab10805 staining 5-Methyl Cytidine in pig embryo (15 to 17 days) tissue section by Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections). Tissue underwent fixation in paraformaldehyde, heat mediated antigen retrieval in Tris-EDTA buffer, permeabilization in Triton X-100 and blocking in 2% BSA for 10 minutes at 25°C. The primary antibody was diluted, 1/100 (PBS + 2% BSA) and incubated with sample for 1 hour at 25°C. An Alexa Fluor® 488 conjugated donkey polyclonal to mouse at 1/250 dilution, was used as secondary.
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![ChIP - Anti-5-methylcytosine (5-mC) antibody [33D3] (ab10805)](https://www.abcam.com/ps/products/10/ab10805/Images/ab10805-265452-ab10805-chip.jpg)
ChIP - Anti-5-methylcytosine (5-mC) antibody [33D3] (ab10805)This image is courtesy of an anonymous Abreview.Native ChIP analysis using unpurified ab10805 binding 5-methylcytosine (5-mC) in nuclear cell lysate derived from mouse embryonic stem cells. Samples were incubated with primary antibody (2µg/µg chromatin) for 16 hours at 4°C in a Glycerol IP buffer. Protein binding was detected using real-time PCR.
Positive control: Magoh2 in HMT KO cells.
Negative Control: Magoh2 in WT cells.
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![Dot Blot - Anti-5-methylcytosine (5-mC) antibody [33D3] (ab10805)](https://www.abcam.com/ps/products/10/ab10805/Images/ab10805-261699-10805-DB.JPG)
Dot Blot - Anti-5-methylcytosine (5-mC) antibody [33D3] (ab10805)Image from Nettersheim D et al., PLoS One. 2013;8(12):e82881. Fig S1.; doi: 10.1371/journal.pone.0082881Dot blot carried out using ab10805 (left blot), showing specificity to 5-methylcytosine. Indicated amounts (20–5 ng) of oligonucleotides containing either 5mC (50%) or 5hmC (20 %) were spotted on positive charged nylon membrane and detected either with 5mC (ab10805) or 5hmC antibody.
Protocols
References
This product has been referenced in:
- Wang KC et al. Ten-eleven translocation 1 dysfunction reduces 5-hydroxymethylcytosine expression levels in gastric cancer cells. Oncol Lett 15:278-284 (2018). Read more (PubMed: 29285192) »
- de Souza AF et al. Dynamics of male canine germ cell development. PLoS One 13:e0193026 (2018). Read more (PubMed: 29489867) »
