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RecombinantRabMAb

Recombinant Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

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ChIC/CUT&RUN sequencing - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • ChIP-sequencing - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Western blot - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Immunoprecipitation - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • ChIP - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Immunocytochemistry/ Immunofluorescence - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Immunocytochemistry/ Immunofluorescence - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Flow Cytometry (Intracellular) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Flow Cytometry (Intracellular) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • ChIP - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
  • Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

Key features and details

  • Produced recombinantly (animal-free) for high batch-to-batch consistency and long term security of supply
  • Rabbit monoclonal [EPR22956-37] to Cdk9 - ChIP Grade
  • Suitable for: Flow Cyt (Intra), IP, WB, IHC-P, ICC/IF, ChIP, ChIC/CUT&RUN-seq, ChIP-sequencing
  • Reacts with: Mouse, Rat, Human

Conjugates logo Related conjugates and formulations

Carrier Free

Overview

  • Product name

    Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade
    See all Cdk9 primary antibodies

  • Description

    Rabbit monoclonal [EPR22956-37] to Cdk9 - ChIP Grade

  • Host species

    Rabbit

  • Tested applications

    Suitable for: Flow Cyt (Intra), IP, WB, IHC-P, ICC/IF, ChIP, ChIC/CUT&RUN-seq, ChIP-sequencingmore details

  • Species reactivity

    Reacts with: Mouse, Rat, Human

  • Immunogen

    Synthetic peptide. This information is proprietary to Abcam and/or its suppliers.

  • Positive control

    • WB: HEK-293T, HeLa, RAW 264.7, PC-12, NIH/3T3 and C6 whole cell lysate; Mouse brain and rat lung tissue lysate; IHC-P: Human pancreas, pancreatic cancer, mouse and rat liver tissue. ICC/IF: HeLa and NIH/3T3 cells. Flow: HeLa and NIH/3T3 cells. IP: NIH/3T3 cell lysate. ChIP: Chromatin from MEF and HeLa cells.

  • General notes

    This product is a recombinant monoclonal antibody, which offers several advantages including:

    • - High batch-to-batch consistency and reproducibility
    • - Improved sensitivity and specificity
    • - Long-term security of supply
    • - Animal-free production
    For more information see here.

    Our RabMAb® technology is a patented hybridoma-based technology for making rabbit monoclonal antibodies. For details on our patents, please refer to RabMAb® patents.

Properties

Applications

The Abpromise guarantee

Our Abpromise guarantee covers the use of ab239364 in the following tested applications.

The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user.

Application Abreviews Notes
Flow Cyt (Intra)
1/600.
IP
1/30.
WB
1/1000. Detects a band of approximately 42, 55 kDa (predicted molecular weight: 43 kDa).
IHC-P
1/2000. Perform heat mediated antigen retrieval with Tris/EDTA buffer pH 9.0 before commencing with IHC staining protocol.

Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution 2) for 20 mins.
ICC/IF
1/100.
ChIP
Use 5 µg for 25 µg of chromatin.
ChIC/CUT&RUN-seq
Use 5µg for 105 cells.
ChIP-sequencing
Use 8µg for 107 cells.
Notes
Flow Cyt (Intra)
1/600.
IP
1/30.
WB
1/1000. Detects a band of approximately 42, 55 kDa (predicted molecular weight: 43 kDa).
IHC-P
1/2000. Perform heat mediated antigen retrieval with Tris/EDTA buffer pH 9.0 before commencing with IHC staining protocol.

Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution 2) for 20 mins.
ICC/IF
1/100.
ChIP
Use 5 µg for 25 µg of chromatin.
ChIC/CUT&RUN-seq
Use 5µg for 105 cells.
ChIP-sequencing
Use 8µg for 107 cells.

Target

  • Function

    Member of the cyclin-dependent kinase pair (CDK9/cyclin-T) complex, also called positive transcription elongation factor b (P-TEFb), which facilitates the transition from abortive to production elongation by phosphorylating the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAP II), SUPT5H and RDBP. The CDK9/cyclin-K complex has also a kinase activity toward CTD of RNAP II and can substitute for P-TEFb in vitro.

  • Tissue specificity

    Ubiquitous.

  • Sequence similarities

    Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.
    Contains 1 protein kinase domain.

  • Cellular localization

    Nucleus.
  • Information by UniProt

  • Database links

    see all

  • Alternative names

    • C-2K antibody
    • CDC2 related kinase antibody
    • CDC2L4 antibody
    • Cdk 9 antibody
    • Cdk9 antibody
    • CDK9_HUMAN antibody
    • Cell division cycle 2-like protein kinase 4 antibody
    • Cell division protein kinase 9 antibody
    • CTK1 antibody
    • Cyclin dependent kinase 9 antibody
    • Cyclin-dependent kinase 9 antibody
    • PITALRE antibody
    • Serine/threonine-protein kinase PITALRE antibody
    • TAK antibody
    • Tat associated kinase complex catalytic subunit antibody
    see all

Images

  • ChIC/CUT&RUN sequencing - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    ChIC/CUT&RUN sequencing - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    CUT&RUN was performed using the ChIC/CUT&RUN pAG-MNAse ab285373, 105 HeLa cells and 5µg of ab239364 [EPR22956-37]. The resulting DNA was sequenced on the Illumina NovaSeq 6000 to a depth of 10 million reads. The ChIP data was conducted on chromatin prepared from HeLa cells. Cells were fixed with 1% formaldehyde for 10 minutes. ChIP was performed with 107 HeLa cells and 4 µg of ab239364 [EPR22956-37]. ChIP DNA was sequenced on the Illumina NovaSeq 6000 to a depth of 30 million reads.

    Additional screenshots of mapped reads can be downloaded here.

  • ChIP-sequencing - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    ChIP-sequencing - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Chromatin was prepared from HeLa cells. Cells were fixed with 1% formaldehyde for 10 minutes. ChIP was performed with 10^7 HeLa cells and 8 µg of ab239364 [EPR22956-37]. ChIP DNA was sequenced on the Illumina NovaSeq 6000 to a depth of 30 million reads.

    Additional screenshots of mapped reads can be downloaded here.

  • Western blot - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Western blot - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    All lanes : Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364) at 1/1000 dilution

    Lane 1 : 293T (human embryonic kidney epithelial cell), whole cell lysate at 10 µg
    Lane 2 : HeLa (human cervix adenocarcinoma epithelial cell), whole cell lysate at 10 µg
    Lane 3 : Mouse lung tissue lysate at 20 µg
    Lane 4 : RAW264.7 (mouse Abelson murine leukemia virus-induced tumor macrophage), whole cell lysate at 10 µg
    Lane 5 : Mouse brain tissue lysate 20 ug
    Lane 6 : Rat lung tissue lysate at 20 µg
    Lane 7 : PC-12 (rat adrenal gland pheochromocytoma), whole cell lysate at 10 µg
    Lane 8 : NIH/3T3 (mouse embryonic fibroblast), whole cell lysate at 10 µg
    Lane 9 : C6 (rat glial tumor glial cell) whole cell lysate at 10 µg

    Secondary
    Lanes 1-5 & 7-9 : Goat Anti-Rabbit IgG H&L (HRP) (ab97051) at 1/100000 dilution
    Lane 6 : VeriBlot for IP Detection Reagent (HRP) (ab131366) at 1/1000 dilution

    Predicted band size: 43 kDa
    Observed band size: 42,55 kDa why is the actual band size different from the predicted?



    Blocking and Dilution Buffer and concentration: 5% NFDM/TBST

    Exposure times.

    Lanes 1-3: 36 seconds Lanes 4-5: 5.5 seconds Lane 6: 3 minutes Lanes 7-8: 15 seconds Lane 9: 48 seconds 

  • Immunoprecipitation - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Immunoprecipitation - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    CDK9 was immunoprecipitated from 0.35 mg NIH/3T3 (mouse embryonic fibroblast), whole cell lysate 10 ug with ab239364 at 1/30 dilution (2ug in 0.35mg lysates). Western blot was performed on the immunoprecipitate using ab239364 at 1/1000 dilution. VeriBlot for IP Detection Reagent (HRP) (ab131366) was used at 1/5000 dilution.

    Lane 1: NIH/3T3 (mouse embryonic fibroblast), whole cell lysate 10 ug

    Lane 2: ab239364 IP in NIH/3T3 whole cell lysate

    Lane 3: Rabbit monoclonal IgG (ab172730) instead of ab239364 in NIH/3T3 whole cell lysate

    Blocking and dilution buffer and concentration: 5% NFDM/TBST.

    Exposure time: 6 seconds

     

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Immunohistochemical analysis of paraffin-embedded Rat liver tissue labeling CDK9 with ab239364 at 1/2000 dilution (0.30 ug/ml) followed by a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101). Nuclear staining on rat liver (PMID: 9766517, 11282025). The section was incubated with ab239364 for 10 mins at RT. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: Secondary antibody is a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution 2) for 20 mins.

  • ChIP - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    ChIP - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Chromatin was prepared from MEF cells according to the Abcam Dual-X-ChIP protocol*. Cells were fixed with 1.5 mM EGS for 30mins and then formaldehyde for 10min. The ChIP was performed with 25 µg of chromatin, 5 µg of ab239364 (red), or 5 µg of rabbit normal IgG ab172730 (gray) and 20 µl of Protein A/G Sepharose beads. The immunoprecipitated DNA was quantified by real time PCR (Taqman approach for active and inactive loci, Sybr green approach for heterochromatic loci).

    Primers and probes are from paper PMC4103662 (PMID: 23663783)
    *http://www.abcam.com/resources?keywords=X%20ChIP%20protocol

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Immunohistochemical analysis of paraffin-embedded Mouse liver tissue labeling CDK9 with ab239364 at 1/2000 dilution (0.30 ug/ml) followed by a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101). Nuclear staining on mouse liver (PMID: 9766517, 11282025) The section was incubated with ab239364 for 10 mins at RT. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: Secondary antibody is a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution 2) for 20 mins.

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Immunohistochemical analysis of paraffin-embedded Human pancreatic cancer tissue labeling CDK9 with ab239364 at 1/2000 dilution (0.30 ug/ml) followed by a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101). Nuclear staining on human pancreatic cancer (PMID: 28231737) The section was incubated with ab239364 for 10 mins at RT. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: Secondary antibody is a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution 2) for 20 mins.

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Immunohistochemical analysis of paraffin-embedded Human pancreas tissue labeling CDK9 with ab239364 at 1/2000 dilution (0.30 ug/ml) followed by a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101). Nuclear staining on human pancreas (PMID: 28231737) The section was incubated with ab239364 for 10 mins at RT. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: Secondary antibody is a ready to use Rabbit specific IHC polymer detection kit HRP/DAB (ab209101).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution 2) for 20 mins.

  • Immunocytochemistry/ Immunofluorescence - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Immunocytochemistry/ Immunofluorescence - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Immunofluorescent analysis of 4% Paraformaldehyde-fixed, 0.1% TritonX-100 permeabilized NIH/3T3 (mouse embryonic fibroblast) cells labelling CDK9 with ab239364 at 1/100 (6 ug/ml) dilution, followed by ab150077 AlexaFluor®488 Goat anti-Rabbit secondary antibody at 1/1000 (2 ug/ml) dilution (Green). Confocal image showing nuclear staining in NIH/3T3 cell line is observed. ab195889 Anti-alpha Tubulin antibody [DM1A] - Microtubule Marker (Alexa Fluor® 594) was used to counterstain tubulin at 1/200 dilution (Red). The Nuclear counterstain was DAPI (Blue).

    Secondary antibody only control: Secondary antibody is ab239364 anti-CDK9 ab150077 AlexaFluor®488 Goat anti-Rabbit secondary at 1/1000 (2 ug/ml) dilution.

  • Immunocytochemistry/ Immunofluorescence - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Immunocytochemistry/ Immunofluorescence - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Immunofluorescent analysis of 4% Paraformaldehyde-fixed, 0.1% TritonX-100 permeabilized HeLa (human cervix adenocarcinoma epithelial cell) cells labelling CDK9 with ab239364 at 1/100 (6 ug/ml) dilution, followed by ab150077 AlexaFluor®488 Goat anti-Rabbit secondary antibody at 1/1000 (2 ug/ml) dilution (Green). Confocal image showing nuclear staining in HeLa cell line is observed. ab195889 Anti-alpha Tubulin antibody [DM1A] - Microtubule Marker (Alexa Fluor® 594) was used to counterstain tubulin at 1/200 dilution (Red). The Nuclear counterstain was DAPI (Blue).

    Secondary antibody only control: Secondary antibody is ab239364 anti-CDK9 ab150077 AlexaFluor®488 Goat anti-Rabbit secondary at 1/1000 (2 ug/ml) dilution.

  • Flow Cytometry (Intracellular) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Flow Cytometry (Intracellular) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Intracellular flow cytometric analysis of 4% paraformaldehyde fixed 90% methanol permeabilized NIH/3T3 (Mouse embryo) cells labelling CDK9 with ab239364 at 1/600 (Red) compared with a Rabbit monoclonal IgG (ab172730) / Black isotype control and an unlabelled control (cells without incubation with primary antibody and secondary antibody) (Blue). A Goat anti rabbit IgG (Alexa Fluor® 488, ab150077) at 1/2000 dilution was used as the secondary antibody. 

     

     

  • Flow Cytometry (Intracellular) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Flow Cytometry (Intracellular) - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Intracellular flow cytometric analysis of 4% paraformaldehyde fixed 90% methanol permeabilized HeLa (Human cervix adenocarcinoma) cells labelling CDK9 with ab239364 at 1/600 (Red) compared with a Rabbit monoclonal IgG (ab172730) / Black isotype control and an unlabelled control (cells without incubation with primary antibody and secondary antibody) (Blue). A Goat anti rabbit IgG (Alexa Fluor® 488, ab150077) at 1/2000 dilution was used as the secondary antibody. 

     

     

  • ChIP - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    ChIP - Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

    Chromatin was prepared from HeLa cells according to the Abcam Dual-X-ChIP protocol*. Cells were fixed with 1.5 mM EGS for 30mins and then formaldehyde for 10min.
    The ChIP was performed with 25 µg of chromatin, 5 µg of ab239364 (red), or 5 µg of rabbit normal IgG ab172730 (gray) and 20 µl of Protein A/G Sepharose beads. The immunoprecipitated DNA was quantified by real time PCR (Taqman approach for active and inactive loci, Sybr green approach for heterochromatic loci).
    Primers and probes are from paper PMCID: PMC2756882.

    *https://www.abcam.com/resources?keywords=X%20ChIP%20protocol

     

  • Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)
    Anti-Cdk9 antibody [EPR22956-37] - ChIP Grade (ab239364)

References (0)

Publishing research using ab239364? Please let us know so that we can cite the reference in this datasheet.

ab239364 has not yet been referenced specifically in any publications.

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