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    draq5-ab108410.pdf

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DRAQ5™ (ab108410)

  • Datasheet
  • SDS
Reviews (5)Q&A (32)References (53)

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Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)
  • Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)
  • Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)

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Overview

  • Product name

    DRAQ5™
  • Tested applications

    Suitable for: FM, Flow Cyt, ICC/IFmore details
  • General notes

    DRAQ5™ is a cell permeable far-red fluorescent DNA dye that can be used in fixed or non-fixed/ live cells in combination with common labels such as GFP or FITC.

    As with any cell­-permeant DNA intercalating probe, DRAQ5 may inhibit cell division in long-term assays and should be tested for any effect.

    DRAQ5 staining can be used in flow cytometry, live cell imaging and cell-based assays and the dye is highly compatible with standard protocols across many instrumentation platforms.

    The chemical name of DRAQ5 is 1, 5-bis{[2-(di-methylamino)ethyl]amino}-4, 8-dihydroxyanthracene-9, 10-dione.

    The advantages of DRAQ5 staining include
    - convenient ready-to-use aqueous solution
    - rapid uptake into living cells, providing a high level of nuclear discrimination
    - no photobleaching effect
    - can be used in most cell types, eukaryotic and prokaryotic: mammalian, bacterial, parasitic, plant, etc.
    - no compensation needed with common FITC/GFP + PE combinations in flow cytometry
    - no RNase treatment required
    - no fluorescence enhancement upon DNA binding
    - compatible with optics of benchtop flow, laser scanning cytometers and non-UV laser scanning and lamp-based confocal microscopes

    SPECTRAL PROPERTIES:

    Excitation

    • 647 nm line optimal (Exmax 646 nm)
    • 488, 514, 568 and 633 nm lines, sub-optimal
    • Two-photon excitation (1047 nm) and excitation dark (700-850 nm)

    Emission (instrument dependent):
    - 665 nm to infra-red max 681 nm / 697 nm intercalated with dsDNA)
    - minimal overlap with vis range e.g. GFP and FITC
    - Em. filters may include 695L, 715LP or 780 LP

     

     

    Concentration: 5 mM

Properties

  • Form

    Liquid
  • Storage instructions

    Store at +4°C. Do Not Freeze. Store In the Dark.
  • Concentration information loading...
  • Research areas

    • Epigenetics and Nuclear Signaling
    • DNA / RNA
    • DNA / Nucleotides
    • Kits/ Lysates/ Other
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    • IHC Tools/ Reagents
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    • Fluorescent dyes and reagents
    • Kits/ Lysates/ Other
    • Kits
    • Cell Staining Kits
    • Fluorescent
    • Kits/ Lysates/ Other
    • Kits
    • Cell Staining Kits
    • Nuclear

Applications

The Abpromise guarantee

Our Abpromise guarantee covers the use of ab108410 in the following tested applications.

The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user.

Application Abreviews Notes
FM
Use at an assay dependent concentration.
Flow Cyt
1/1000 - 1/250. For Gating of Nucleated cells = 5µM; For Cell Cycle Analysis = 20µM
ICC/IF
1/1000. For Cell-based assays, Immunofluorescence microscopy and In-Cell WB = 5µM
It is highly recommended that the concentration and labelling conditions are carefully determined by each investigator for optimal performance in the assay of interest. For more specific information about the applications, please refer to the Protocol Booklet section.
Notes
FM
Use at an assay dependent concentration.
Flow Cyt
1/1000 - 1/250. For Gating of Nucleated cells = 5µM; For Cell Cycle Analysis = 20µM
ICC/IF
1/1000. For Cell-based assays, Immunofluorescence microscopy and In-Cell WB = 5µM
It is highly recommended that the concentration and labelling conditions are carefully determined by each investigator for optimal performance in the assay of interest. For more specific information about the applications, please refer to the Protocol Booklet section.

Images

  • Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)
    Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)

    HeLa cells were stained with Lamin B1 antibody - Nuclear Envelope Marker (ab16048) and alpha Tubulin antibody [DM1A] - Loading Control (ab7291). The cells were 100% methanol fixed (5 min) and then incubated in 1% BSA in 0.1% PBS-Tween for 1h to permeabilize the cells and block non-specific protein-protein interactions. The cells were then incubated with the primary antibodies (ab16048 & ab7291) at 1µg/ml overnight at 4C. The secondary antibodies were Goat polyclonal Secondary Antibody to Rabbit IgG - H&L (DyLight® 488), pre-adsorbed (ab96899) (green) and Goat polyclonal Secondary Antibody to Mouse IgG - H&L (DyLight® 594), pre-adsorbed (ab96881) (red) used at 1/250 dilution for 1h at room temperature. 5µM DRAQ5 was added to the secondary antibody mixture to label nuclear DNA (pseudocolor purple).

  • Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)
    Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)

    HeLa cells were stained with beta Catenin antibody (ab16051) and alpha Tubulin antibody [DM1A] - Loading Control (ab7291). The cells were 100% methanol fixed (5 min) and then incubated in 1% BSA in 0.1% PBS-Tween for 1h to permeabilize the cells and block non-specific protein-protein interactions. The cells were then incubated with the primary antibodies (ab16051 & ab7921) at 1µg/ml overnight at 4C. The secondary antibodies were Goat polyclonal Secondary Antibody to Rabbit IgG - H&L (DyLight® 488), pre-adsorbed (ab96899) (green) and Goat polyclonal Secondary Antibody to Rabbit IgG - H&L (DyLight® 594), pre-adsorbed (ab96899) (red) used at 1/250 dilution for 1h at room temperature. 5µM DRAQ5 was added to the secondary antibody mixture to label nuclear DNA (pseudocolor orange).

  • Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)
    Immunocytochemistry/ Immunofluorescence - DRAQ5™ (ab108410)
    DRAQ5™-stained nuclei in a adult Drosophila brain.

Protocols

  • Protocol Booklet

Click here to view the general protocols

Datasheets and documents

  • SDS download

  • Datasheet download

    Download

References (53)

Publishing research using ab108410? Please let us know so that we can cite the reference in this datasheet.

ab108410 has been referenced in 53 publications.

  • Yap EL  et al. Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network. Nature 590:115-121 (2021). PubMed: 33299180
  • Zhang YW  et al. Human Plasma In-Cell Western Assays-An In vitro Predictor for In vivo Pharmacology in Oncology Drug Discovery. Curr Protoc 1:e51 (2021). PubMed: 33587334
  • SenGupta S  et al. Triple-Negative Breast Cancer Cells Recruit Neutrophils by Secreting TGF-ß and CXCR2 Ligands. Front Immunol 12:659996 (2021). PubMed: 33912188
  • Senatore E  et al. The TBC1D31/praja2 complex controls primary ciliogenesis through PKA-directed OFD1 ubiquitylation. EMBO J 40:e106503 (2021). PubMed: 33934390
  • Martínez AL  et al. Development of a novel in vitro assay to screen for neuroprotective drugs against iatrogenic neurite shortening. PLoS One 16:e0248139 (2021). PubMed: 33690613
View all Publications for this product

Customer reviews and Q&As

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Submit a review Submit a question

31-37 of 37 Abreviews or Q&A

Question

Bonjour et merci de votre réponse. Pour répondre à vos questions, les différents produits que j'ai utilisés sont différents Hoechst, de l'iodure de propidium, du thiazole orange. Je cherche à marquer de l'ADN de parasite dans des globules rouges de souris (qui normalement n'en contiennent pas). Ca parait simple, mais il me faut distinguer ces globules rouges parasités des réticulocytes. Les réticulocytes sont des globules rouges néoformés qui contiennent de l'ARN mais pas d'ADN.  Pouvez vous m'expliquer comment Dracq5 est excitable à 488 avec un spectre que vous présentez ainsi :     Cordialement  

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Abcam community

Verified customer

Asked on Oct 25 2011

Answer

Merci de nous avoir contactés. D'après les données expérimentales DRAQ5 est excitable à 488nm mais comme le montre le spectre, la longueur d'onde optimale est 647 nm. Malgré la faible absorbance, l'excitation à 488nm permet d'offrir un bon coefficient de variation pour une utilisation en cytométrie en flux. J'espère que ces informations vous seront utiles. N'hésitez pas à nous contacter de nouveau si vous avez d'autres questions.  

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Abcam Scientific Support

Answered on Oct 25 2011

Question

Hello,   I am a student and I have a quick question about the flow cytometer. I want to know how can i check for aneuploid cell population in my cultured cell line using flow cytometer. Please let me know.   Thank You

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Abcam community

Verified customer

Asked on Oct 17 2011

Answer

Thank you for contacting us with your question. The cell permeable fluorescent DNA dye DRAQ5, ab108410, can be used to analyze the ploidy of a cell population- https://www.abcam.com/DRAQ5™-50-µl-5mM-ab108410.html DNA dyes are a common tool for cell cycle and ploidy analysis, and there are several publications explaining the method and protocol, such as the following articles- http://www.horizonpress.com/cimb/v/v3/v3n303.pdf http://onlinelibrary.wiley.com/doi/10.1002/cyto.a.10051/full I hope this information will be useful, but please let me know if you have any questions and I'll be happy to help.

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Abcam Scientific Support

Answered on Oct 17 2011

Question

I might be interested in purchasing the DRAQ5 dye for DNA staining for FACS. I wanted to double check that I will get 20 % discount. I have another question, could it be used to label dsDNA or RNA itself? I am trying to do some experiments measuring how cells are taking up DNA and RNA and I need the fluorescently labeled. Thank you very much,

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Abcam community

Verified customer

Asked on Aug 30 2011

Answer

Thank you for your inquiry. DRAQ5 labels dsDNA. It intercalates DNA at the A-T sites and will do so stoichiometrically. Although DRAQ5 probably does label some RNA, in practice this is not seen – mainly due to the very low quantum yield of DRAQ5 and the distributed presence of RNA in a cell. So for all intents and purposes, DRAQ5 can be considered as a dsDNA dye. You may wish to refer to McGrath et al, JIM 2008.   They helpfully used a combination of DRAQ5 (DNA) and Thiazole Orange (RNA) to analyze the lineage progression of erythropoiesis (analysed on the Amnis ImageStream). http://www.ncbi.nlm.nih.gov/pubmed/18539294 I hope this information helps. Please contact us with any other questions.

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Abcam Scientific Support

Answered on Aug 30 2011

Question

I'm using DRAQ7 and would like to stain for live/dead fixed cells in microscopy. According to the protocol, DRAQ7 will stain all fixed and permeabilized cells in the preparation. How can I then differentiate between my live and dead cells if all are going to be stained? Is there something I can do to change the protocol?

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Abcam community

Verified customer

Asked on Aug 15 2011

Answer

Thank you for your inquiry. DRAQ7 is a LIVE cell impermeant far-red DNA dye. It can be used to identify permeable cells in a mix of live and dead cells (i.e. the dead cells) – but in a preparation of fixed cells, all of the cells will be permeant and therefore all will be stained with DRAQ7. If you are trying to differentiate between live and dead cells in a sample (before fixation), then you could simply add DRAQ7 prior to fixation and identify (count) the number of DRAQ7 labelled cells – they will be the dead cells. After fixation, the DRAQ7 will enter all of the cells – and you can now get a total count. Subtraction of dead cell count from total count will give the live cell count.  There are of course issues here – especially if the same sample cannot be used prior to and after fixation. Another idea might be to use DRAQ7 and DRAQ5 (ab108410) in sequence prior to fixation. Adding DRAQ7 first will give the dead cell count. Adding DRAQ5 will then give the total count – and usefully both dyes are in the far-red (same emission). Subtraction of dead count from total count will give the live count. The sample could then be fixed. I hope that this is helpful. Please let me know if you have any other questions.

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Abcam Scientific Support

Answered on Aug 15 2011

Question

I want to know if DRAQ5 can replace Hoechst to look at apoptotic nuclei. Thanks

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Abcam community

Verified customer

Asked on Aug 11 2011

Answer

Thank you for contacting us. DRAQ5 can be used as replacement for Hoechst for staining live or fixed cell. In case of apoptotic differentiation we would recommend using DRAQ7 dye, this dye does not penetrate living cells so it will only stain dead and membrane-compromised cells. The catalogue number of DRAQ7 is ab109202; https://www.abcam.com/DRAQ7™-1ml-0-3mM-ab109202.html I hope this information is helpful to you. Please do not hesitate to contact us if you need any more advice or information.

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Abcam Scientific Support

Answered on Aug 11 2011

Question

24 h experiment to detect live cells, no additional treatment which dye best to use? Draq5 (for live cells) - too toxic Draq7 is for staining dead and permeabilized cells

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Abcam community

Verified customer

Asked on Aug 03 2011

Answer

Thank you for contacting us. I have received the following response from the lab: We would suggest to approach this as follows ... Treat the cell culture with 1-3 uM DRAQ7 during the incubation, image to enumerate the dead/leaky cells at the required end-point and then immediately add 3-5 uM DRAQ5, allow to stain for 5 -10 min and measure again for ALL events, IN THE SAME CHANNEL. The two images will show: 1) dead/apoptotic cells, DRAQ7+ 2) all nucleated cells, DRAQ5+ The two images can be artificially colored to reveal the live cells, when merged. The DRAQ7 positive events can be monitored by imaging in real time during the culture period to observe the progression and dynamics of cell damage and death. Red excitation will limit the risk of DNA damage that is common to UV excited probes. The Draq5 would need being added at the very end of the 24 hour time point, after the last DRAQ7 read. It is tricky to measure the live cells at the beginning of the experiment (i.e. around 0 or 1 hour). We would consider using phase contrast to estimate total cells and subtract the initial DRAQ7 positives. There is no real way to remove Draq5 after incubation for 10 min or so. Once it’s labelled to DNA then it’s there “irreversibly” due to high affinity. As Draq7 is not cytotoxic, an incubation with Draq7 for 24 hours would be fine. DRAQ7 only enters cells that are membrane-compromised. Our data show effectively no toxicity after 96 hours of proximity to proliferative cells. I hope this information is helpful to you. Please do not hesitate to contact us if you need any more advice or information.

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Abcam Scientific Support

Answered on Aug 03 2011

Question

Dear Sir/Madam, I am interested in your product, DRAQ5TM, for mitochondrial DNA labeling in live and/or fixed cells. I would very much appreciate any feedback from you i.e. protocols, literature and applicability from you before I can decide to proceed with an order. Thank you very much in advance, Best Regards,   P.S. Do you currently have a distributor in Greece, or would it have to be a U.K. order?      

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Abcam community

Verified customer

Asked on Dec 05 2011

Answer

Thank you for your enquiry. The following publications have used DRAQ5™ dye: Smith PJ. Blunt N. Wiltshire M. Hoy T. Teesdale-Spittle P. Craven MR. Watson JV. Amos WB. Errington RJ. Patterson LH. Characteristics of a novel deep red/infrared fluorescent cell-permeant DNA probe, DRAQ5™, in intact human cells analyzed by flow cytometry, confocal and multiphoton microscopy. Cytometry. 40(4):280-91, 2000. Wiltshire M. Patterson LH. Smith PJ. A novel deep red/low infrared fluorescent flow cytometric probe, DRAQ5NO™, for the discrimination of intact nucleated cells in apoptotic cell populations. Cytometry. 39(3):217-23, 2000. Smith PJ. Wiltshire M. Davies S. Patterson LH. Hoy T. A novel cell permeant and far red-fluorescing DNA probe, DRAQ5™, for blood cell discrimination by flow cytometry. Journal of Immunological Methods. 229(1-2):131-9, 1999 There is a protocol available on the protocols tab on the online datasheet:   https://www.abcam.com/ps/products/108/ab108410/documents/ab108410%20DRAQ5%20protocol%20(Website).pdf With regards to ordering from Greece, we do not have a Greek distributor and you can place your order directly with our UK office. Email orders@abcam.com. I hope this will be helpful to you. If you have any further questions, please do not hesitate to contact us. 

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Abcam Scientific Support

Answered on Dec 05 2011

31-37 of 37 Abreviews or Q&A

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