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Rabbit Recombinant Monoclonal 5-Methylcytosine antibody. Suitable for ICC, Flow Cyt, ELISA, Dot, MeDIP, IHC-P and reacts with Modified Nucleic Acid samples. Cited in 18 publications. Immunogen corresponding to Chemical / Small Molecule corresponding to 5-Methylcytosine.

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Images

Immunocytochemistry - Anti-5-methylcytosine (5-mC) antibody [RM231] (AB214727), expandable thumbnail
  • ELISA - Anti-5-methylcytosine (5-mC) antibody [RM231] (AB214727), expandable thumbnail
  • MeDIP - Anti-5-methylcytosine (5-mC) antibody [RM231] (AB214727), expandable thumbnail
  • Flow Cytometry - Anti-5-methylcytosine (5-mC) antibody [RM231] (AB214727), expandable thumbnail
  • Dot Blot - Anti-5-methylcytosine (5-mC) antibody [RM231] (AB214727), expandable thumbnail

Publications

Key facts

Isotype

IgG

Host species

Rabbit

Storage buffer

Preservative: 0.09% Sodium azide
Constituents: 50% Glycerol (glycerin, glycerine), 48% PBS, 1% BSA

Form

Liquid

Clonality

Monoclonal

Immunogen

  • Chemical / Small Molecule corresponding to 5-Methylcytosine.

Reactivity data

Select an application
Product promiseTestedExpectedPredictedNot recommended
ICCFlow CytELISADotMeDIPIHC-P
Modified Nucleic Acid
Tested
Tested
Tested
Tested
Tested
Tested

Tested
Tested

Species

Modified Nucleic Acid

Dilution info

0.5-2 µg/mL

Notes

-

Tested
Tested

Species

Modified Nucleic Acid

Dilution info

0.5-2 µg/mL

Notes

-

Tested
Tested

Species

Modified Nucleic Acid

Dilution info

0.1-3 µg/mL

Notes

-

Tested
Tested

Species

Modified Nucleic Acid

Dilution info

1/0.5 - 1/2

Notes

-

Tested
Tested

Species

Modified Nucleic Acid

Dilution info

0.2-2 µg/mL

Notes

-

Tested
Tested

Species

Modified Nucleic Acid

Dilution info

-

Notes

-

Associated Products

Select an associated product type

4 products for Alternative Product

Alternative names

Recommended products

Rabbit Recombinant Monoclonal 5-Methylcytosine antibody. Suitable for ICC, Flow Cyt, ELISA, Dot, MeDIP, IHC-P and reacts with Modified Nucleic Acid samples. Cited in 18 publications. Immunogen corresponding to Chemical / Small Molecule corresponding to 5-Methylcytosine.

Alternative names

Key facts

Isotype

IgG

Form

Liquid

Clonality

Monoclonal

Immunogen
  • Chemical / Small Molecule corresponding to 5-Methylcytosine.
Clone number

RM231

Purification technique

Affinity purification Protein A

Specificity

ab214727 reacts to 5-methylcytosine in both single-stranded and double-stranded DNA. No cross reactivity with non-methylated cytosine and hydroxymethylcytosine in DNA.

Concentration
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Storage

Shipped at conditions

Blue Ice

Appropriate short-term storage duration

1-2 weeks

Appropriate short-term storage conditions

+4°C

Appropriate long-term storage conditions

-20°C

Aliquoting information

Upon delivery aliquot

Storage information

Avoid freeze / thaw cycle

Supplementary info

This supplementary information is collated from multiple sources and compiled automatically.

Activity summary

5-methylcytosine often referred to as 5-mC 5-methyl cytosine or 5-methylcytidine is a methylated form of the nucleobase cytosine found in the DNA of various organisms. This modification typically occurs at the carbon 5 position of the cytosine ring contributing to the epigenetic regulation of gene expression. While the mass of 5-mC itself is relatively small since it is a modified nucleotide its impact on gene regulation is significant. 5-mC is widely expressed in the genome of higher eukaryotes particularly in CpG dinucleotides where it plays a role in mammalian development and cell differentiation.

Biological function summary

Cytosine methylation affects DNA-protein interactions leading to changes in chromatin structure and the regulation of gene activity. 5-methylcytosine is an important player in the chromatin modification complex where it collaborates with other epigenetic marks to control gene expression profiles. This modified nucleotide helps to stabilize gene silencing maintaining the closed chromatin state which inhibits the transcription machinery's access to specific genomic regions. Such silencing is vital during processes like X-chromosome inactivation and imprinting.

Pathways

Researchers have identified 5-mC within two critical pathways: DNA methylation and demethylation cycle and histone modification pathway. In the DNA methylation pathway 5-mC interacts closely with proteins like DNA methyltransferases (DNMTs) which directly add methyl groups to cytosine bases. In the context of histone modification 5-mC influences the binding of methyl-CpG-binding domain (MBD) proteins which read and interpret methylated DNA marks affecting histone modification and DNA accessibility.

Associated diseases and disorders

The dysregulation of 5-methylcytosine patterns associates prominently with cancer and neurological disorders. Abnormal methylation patterns where 5-mC is either hypermethylated or hypomethylated can lead to the silencing of tumor suppressor genes or activation of oncogenes forming a basis for cancer development. In neurological disorders altered 5-mC levels link to conditions such as Rett syndrome where the dysfunction of the associated protein MeCP2 an important reader of 5-mC contributes to the disease pathology.

Product promise

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7 product images

  • Immunocytochemistry - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727), expandable thumbnail

    Immunocytochemistry - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727)

    Immunocytochemical analysis of HeLa cells using two different fixation/denaturation conditions and ab214727 at 2 μg/mL dilution (red); actin filaments have been labeled with fluorescein phalloidin (green), and nuclei stained with DAPI (blue).

    Chromatin denaturation is required to expose the epitopes in DNA and allow the antibody to efficiently detect 5mC. Stronger denaturing conditions such as HCl (bottom panels) will result in enhanced nuclear staining compared to weaker denaturing conditions such as acetic acid (HAc, top panels).

    However, stronger denaturants such as using HCl may alter or degrade other molecules and intracellular structures, which can be problematic for experiments involving multi-color staining or looking at subcellular morphology. For those experiments we would suggest using weaker denaturants such as HAc.

  • ELISA - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727), expandable thumbnail

    ELISA - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727)

    Direct ELISA of HeLa cell genomic DNA using anti-5-mC antibody (RM231). The plate was directly coated with different concentrations of genomic DNA isolated from HeLa cells. 1 ug/mL or 3 ug/mL of ab214727 was used as the primary antibody, and a HRP conjugated anti-rabbit IgG as the secondary antibody.

  • MeDIP - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727), expandable thumbnail

    MeDIP - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727)

    MeDIP was performed using anti-5-mC antibody (RM231) at a 2:1 DNA:Ab ratio. 1 ng of unmethylated, 5-Methylcytosine (5-mC) or 5-Hydroxymethylcytosine (5-hmC) DNA standard (897 bp) was spiked in 1ug of genomic DNA isolated from HeLa cells as the control. Realtime PCR was then performed to determine the capture of DNA standard as in % of input.

  • Flow Cytometry - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727), expandable thumbnail

    Flow Cytometry - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727)

    Flow Cytometry analysis of 5-mC expression in HEK293 cells using ab214727. The cells were fixed with ice-cold MeOH, permeabilized with 0.5% Triton X-100, denatured with 2N HCl, then stained with ab214727 (Blue) or with a negative control antibody (Red).

  • Dot Blot - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727), expandable thumbnail

    Dot Blot - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727)

    Dot blot of double stranded DNA using ab214727 at 0.5 ug/mL. The membrane was pre-spotted with 50, 5, and 0.5 ng/dot of double stranded 5-Hydroxymethylcytosine (5-hmC) DNA, 5-Methylcytosine (5-mC) DNA, and unmethylated DNA. The pre-spotted membrane was then blotted with ab214727.

  • ELISA - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727), expandable thumbnail

    ELISA - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727)

    ELISA of single stranded DNA using ab214727 in a serial dilution. The plate was coated with streptavidin and then biotinylated single stranded unmethylated DNA, 5-Methylcytosine (5-mC) DNA, and 5-Hydroxymethylcytosine (5-hmC) DNA. Secondary antibody: alkaline phosphatase conjugated anti-rabbit IgG.

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727), expandable thumbnail

    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-5-methylcytosine (5-mC) antibody [RM231] (ab214727)

    ab214727 staining 5-methylcytosine (5-mC) in human brain tissue sections by Immunohistochemistry (paraformaldehyde-fixed, paraffin-embedded sections). Tissue was blocked with 5% normal goat serum for 60 minutes at 22°C. Samples were incubated with primary antibody (20ng/ml) for 1 hour at 22°C. A HRP-conjugated Goat anti-rabbit IgG polyclonal was used as the secondary antibody.

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