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AB4166

Anti-TDP1 antibody

4

(6 Reviews)

|

(27 Publications)

Rabbit Polyclonal TDP1 antibody. Suitable for WB and reacts with Recombinant fragment - Human, Human samples. Cited in 27 publications.

View Alternative Names

Tyrosyl-DNA phosphodiesterase 1, Tyr-DNA phosphodiesterase 1, TDP1

3 Images
Western blot - Anti-TDP1 antibody (AB4166)
  • WB

Collaborator

Western blot - Anti-TDP1 antibody (AB4166)

ab4166 was incubated for 1 hr at room temp.

Lane 1:

Molecular weight markers

Lanes 2 - 5:

Western blot - Anti-TDP1 antibody (ab4166) at 1/1000 dilution

Lane 2:

1 ng purified recombinant human TDP1

Lane 3:

3 ng purified recombinant human TDP1

Lane 4:

6 ng purified recombinant human TDP1

Lane 5:

6 micrograms total protein from MCF7 human cell extract

Predicted band size: 68 kDa

Observed band size: 68 kDa

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This image is courtesy of Keith Caldecott, University of Sussex

Western blot - Anti-TDP1 antibody (AB4166)
  • WB

Lab

Western blot - Anti-TDP1 antibody (AB4166)

All lanes:

Western blot - Anti-TDP1 antibody (ab4166) at 1 µg/mL

All lanes:

Jurkat nuclear extract lysate (<a href='/en-us/products/unavailable/jurkat-nuclear-extract-lysate-ab14844'>ab14844</a>) at 20 µg

Secondary

All lanes:

Western blot - Goat Anti-Rabbit IgG H&L (HRP) (<a href='/en-us/products/secondary-antibodies/goat-rabbit-igg-h-l-hrp-ab97051'>ab97051</a>) at 1/10000 dilution

Predicted band size: 68 kDa

Observed band size: 75 kDa

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Exposure time: 4min

Western blot - Anti-TDP1 antibody (AB4166)
  • WB

CiteAb

Western blot - Anti-TDP1 antibody (AB4166)

TDP1 western blot using anti-TDP1 antibody ab4166. Publication image and figure legend from Walker, S., Meisenberg, C., et al., 2014, Anal Biochem, PubMed 24637157.

ab4166 was used in this publication in western blot. This may not be the same as the application(s) guaranteed by Abcam. For a full list of applications guaranteed by Abcam for ab4166 please see the product overview.

TDP1 activity in whole cell extracts. Whole cell extracts (WCE) generated from HEK293 transfected with pCI empty vector or pCI vector for human TDP1 overexpression (A); wild-type or TDP1−/− mouse embryonic fibroblast (MEF)(C); and TDP2−/− DT40 cells containing either pcDNA3.1-HisC empty vector or pcDNA3.1-HisC vector for human TDP2 overexpression (D) were used as the TDP1 source in the TDP1 fluorescent assay. The 15 μL reactions contained the indicated amounts of WCE. The reaction was carried out at room temperature for 10 min and terminated by addition of quench reagent. Relative fluorescence is shown and was calculated against the fluorescence obtained for 6.25 pM recombinant WT human TDP1 protein for each of three independent experiments. Error bars represent the standard deviation. WCEs generated from HEK293 transfected with pCI empty vector or pCI vector for human TDP1 overexpression (B) and TDP2−/− DT40 containing either pcDNA3.1-HisC empty vector or pcDNA3.1-HisC vector for human TDP2 expression (E) were separated by 10% SDS-PAGE, followed by Western blot analysis using antibodies against human TDP2 and actin.

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Key facts

Host species

Rabbit

Clonality

Polyclonal

Isotype

IgG

Carrier free

No

Reacts with

Human

Applications

WB

applications

Immunogen

The exact immunogen used to generate this antibody is proprietary information.

Reactivity data

{ "title": "Reactivity Data", "filters": { "stats": ["", "Species", "Dilution Info", "Notes"], "tabs": { "all-applications": {"fullname" : "All Applications", "shortname": "All Applications"}, "WB" : {"fullname" : "Western blot", "shortname":"WB"} }, "product-promise": { "all": "all", "testedAndGuaranteed": "tested", "guaranteed": "expected", "predicted": "predicted", "notRecommended": "not-recommended" } }, "values": { "Human": { "WB-species-checked": "testedAndGuaranteed", "WB-species-dilution-info": "1 µg/mL", "WB-species-notes": "<p>Abcam recommends blocking with 1-3% Milk.</p>" }, "Rat": { "WB-species-checked": "predicted", "WB-species-dilution-info": "", "WB-species-notes": "" }, "Recombinant fragment - Human": { "WB-species-checked": "testedAndGuaranteed", "WB-species-dilution-info": "1 µg/mL", "WB-species-notes": "<p>Abcam recommends blocking with 1-3% Milk.</p>" } } }

Properties and storage information

Form
Liquid
Purification technique
Affinity purification Immunogen
Storage buffer
pH: 7.4 Preservative: 0.02% Sodium azide Constituents: 98.98% PBS, 1% BSA
Shipped at conditions
Blue Ice
Appropriate short-term storage duration
1-2 weeks
Appropriate short-term storage conditions
+4°C
Appropriate long-term storage conditions
-20°C
Aliquoting information
Upon delivery aliquot
Storage information
Avoid freeze / thaw cycle

Supplementary information

This supplementary information is collated from multiple sources and compiled automatically.

TDP1 short for Tyrosyl-DNA Phosphodiesterase 1 is an enzyme involved in the repair of DNA damage. Also known as SCAN1 protein this enzyme has a mass of approximately 60 kDa and is expressed in a variety of tissues with higher levels seen in the brain and heart. It plays a mechanical role by hydrolyzing the phosphodiester bond between a DNA 3'-phosphate and a tyrosine residue an important step in resolving topoisomerase I-DNA crosslinks during the repair of stalled replication forks.
Biological function summary

TDP1 contributes significantly to the maintenance of genomic stability. It functions primarily as a DNA repair enzyme acting independently rather than as part of a protein complex. TDP1's ability to cleave phosphotyrosyl bonds makes it integral to processes that safeguard against DNA strand breaks induced by oxidative stress or other exogenous factors. Though not part of a complex its function is supported by the interaction with proteins like DNA polymerase which aids in the subsequent steps of DNA repair synthesis.

Pathways

TDP1 is involved in the DNA damage response and repair pathways. It collaborates heavily with the Base Excision Repair (BER) and the Single-Strand Break Repair (SSBR) pathways. TDP1 works alongside proteins like PARP1 facilitating the repair of single-strand DNA breaks which is critical for cell survival and prevention of mutations. Aphidicolin a known inhibitor of DNA polymerase can affect DNA synthesis steps that follow TDP1 activity indicating how interconnected these pathways are.

TDP1 has notable associations with certain neurodegenerative diseases and cancer. Mutations or dysregulation in TDP1 have been implicated in the autosomal recessive disorder known as Spinocerebellar Ataxia with Axonal Neuropathy (SCAN1). Additionally due to its role in DNA repair TDP1 may influence cancer progression as cells with impaired DNA repair capabilities accumulate mutations that could lead to tumorigenesis. The interaction with methotrexate a chemotherapeutic agent can also affect cancer treatment outcomes given methotrexate's influence on folate metabolism and DNA synthesis.

Product protocols

For this product, it's our understanding that no specific protocols are required. You can visit:

Target data

DNA repair enzyme that can remove a variety of covalent adducts from DNA through hydrolysis of a 3'-phosphodiester bond, giving rise to DNA with a free 3' phosphate. Catalyzes the hydrolysis of dead-end complexes between DNA and the topoisomerase I active site tyrosine residue. Hydrolyzes 3'-phosphoglycolates on protruding 3' ends on DNA double-strand breaks due to DNA damage by radiation and free radicals. Acts on blunt-ended double-strand DNA breaks and on single-stranded DNA. Has low 3'exonuclease activity and can remove a single nucleoside from the 3'end of DNA and RNA molecules with 3'hydroxyl groups. Has no exonuclease activity towards DNA or RNA with a 3'phosphate.
See full target information TDP1

Publications (27)

Recent publications for all applications. Explore the full list and refine your search

BMC biology 21:110 PubMed37194054

2023

MUS81 cleaves TOP1-derived lesions and other DNA-protein cross-links.

Applications

Unspecified application

Species

Unspecified reactive species

Victoria Marini,Fedor Nikulenkov,Pounami Samadder,Sissel Juul,Birgitta R Knudsen,Lumir Krejci

STAR protocols 4:102218 PubMed37058403

2023

Fluorescence-resonance-energy-transfer-based assay to estimate modulation of TDP1 activity through arginine methylation.

Applications

Unspecified application

Species

Unspecified reactive species

Sangheeta Bhattacharjee,Julia M Richardson,Benu Brata Das

Science advances 8:eabq0648 PubMed36490343

2022

NEDDylated Cullin 3 mediates the adaptive response to topoisomerase 1 inhibitors.

Applications

Unspecified application

Species

Unspecified reactive species

Alice Meroni,Jan Grosser,Sumedha Agashe,Natasha Ramakrishnan,Jessica Jackson,Priyanka Verma,Laura Baranello,Alessandro Vindigni

Oncology and therapy 9:541-556 PubMed34159519

2021

Validating TDP1 as an Inhibition Target for the Development of Chemosensitizers for Camptothecin-Based Chemotherapy Drugs.

Applications

Unspecified application

Species

Unspecified reactive species

Euphemia Leung,Jinal Patel,Jennifer A Hollywood,Ayesha Zafar,Petr Tomek,David Barker,Lisa I Pilkington,Michelle van Rensburg,Ries J Langley,Nuala A Helsby,Christopher J Squire,Bruce C Baguley,William A Denny,Jóhannes Reynisson,Ivanhoe K H Leung

Cell reports 33:108569 PubMed33378676

2020

DNA and RNA Cleavage Complexes and Repair Pathway for TOP3B RNA- and DNA-Protein Crosslinks.

Applications

Unspecified application

Species

Unspecified reactive species

Sourav Saha,Yilun Sun,Shar-Yin Naomi Huang,Simone Andrea Baechler,Lorinc Sandor Pongor,Keli Agama,Ukhyun Jo,Hongliang Zhang,Yuk-Ching Tse-Dinh,Yves Pommier

Molecular cell 78:1152-1165.e8 PubMed32516598

2020

Endogenous DNA 3' Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease.

Applications

Unspecified application

Species

Unspecified reactive species

Alejandro Álvarez-Quilón,Jessica L Wojtaszek,Marie-Claude Mathieu,Tejas Patel,C Denise Appel,Nicole Hustedt,Silvia Emma Rossi,Bret D Wallace,Dheva Setiaputra,Salomé Adam,Yota Ohashi,Henrique Melo,Tiffany Cho,Christian Gervais,Ivan M Muñoz,Eric Grazzini,Jordan T F Young,John Rouse,Michael Zinda,R Scott Williams,Daniel Durocher

Science advances 5:eaax9778 PubMed31723605

2019

SCAN1-TDP1 trapping on mitochondrial DNA promotes mitochondrial dysfunction and mitophagy.

Applications

Unspecified application

Species

Unspecified reactive species

Arijit Ghosh,Sangheeta Bhattacharjee,Srijita Paul Chowdhuri,Abhik Mallick,Ishita Rehman,Sudipta Basu,Benu Brata Das

Nucleic acids research 46:5601-5617 PubMed29718323

2018

PRMT5-mediated arginine methylation of TDP1 for the repair of topoisomerase I covalent complexes.

Applications

Unspecified application

Species

Unspecified reactive species

Ishita Rehman,Suparna M Basu,Subhendu K Das,Sangheeta Bhattacharjee,Arijit Ghosh,Yves Pommier,Benu Brata Das

Scientific reports 7:12849 PubMed28993637

2017

HTLV-1 bZIP factor suppresses TDP1 expression through inhibition of NRF-1 in adult T-cell leukemia.

Applications

Unspecified application

Species

Unspecified reactive species

Yoko Takiuchi,Masayuki Kobayashi,Kohei Tada,Fumie Iwai,Maki Sakurada,Shigeki Hirabayashi,Kayoko Nagata,Kotaro Shirakawa,Keisuke Shindo,Jun-Ichirou Yasunaga,Yasuhiro Murakawa,Vinodh Rajapakse,Yves Pommier,Masao Matsuoka,Akifumi Takaori-Kondo

Science advances 3:e1602506 PubMed28508041

2017

Mitochondrial protein-linked DNA breaks perturb mitochondrial gene transcription and trigger free radical-induced DNA damage.

Applications

Unspecified application

Species

Unspecified reactive species

Shih-Chieh Chiang,Martin Meagher,Nick Kassouf,Majid Hafezparast,Peter J McKinnon,Rachel Haywood,Sherif F El-Khamisy
View all publications

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