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    human-sp3-knockout-hct116-cell-line-ab266879.pdf

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Epigenetics and Nuclear Signaling Transcription Other factors
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Human SP3 knockout HCT116 cell line (ab266879)

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Sanger Sequencing - Human SP3 knockout HCT116 cell line (ab266879)

    Overview

    • Product name

      Human SP3 knockout HCT116 cell line
    • Parental Cell Line

      HCT116
    • Organism

      Human
    • Mutation description

      Knockout achieved by using CRISPR/Cas9, Homozygous: 14 bp deletion in exon 2
    • Passage number

      <20
    • Knockout validation

      Sanger Sequencing
    • Biosafety level

      1
    • General notes

      Recommended control: Human wild-type HCT116 cell line (ab255451). Please note a wild-type cell line is not automatically included with a knockout cell line order, if required please add recommended wild-type cell line at no additional cost using the code WILDTYPE-TMTK1.

      Cryopreservation cell medium: Cell Freezing Medium-DMSO Serum free media, contains 8.7% DMSO in MEM supplemented with methyl cellulose.

      Culture medium: McCoY5a + 10% FBS

      Initial handling guidelines: Upon arrival, the vial should be stored in liquid nitrogen vapor phase and not at -80ºC. Storage at -80ºC may result in loss of viability.

      1. Thaw the vial in 37ºC water bath approximately 1-2 minutes.
      2. Transfer the cell suspension (0.8 ml) to a 15 ml/50 ml conical sterile polypropylene centrifuge tube containing 8.4 ml pre-warmed culture medium, wash vial with an additional 0.8 ml culture medium (total volume 10 ml) to collect remaining cells, and centrifuge at 201 x g (rcf) for 5 minutes at room temperature. 10 ml represents minimum recommended dilution. 20 ml represents maximum recommended dilution.
      3. Resuspend the cell pellet in 5 ml pre-warmed culture medium and count using a haemocytometer (Click here to view haemocytometer protocol) or alternative cell counting method. Based on cell count, seed cells in an appropriate cell culture flask at a density of 2x104 cells/cm2. This should allow for confluency within 48 hours. Seeding density is given as a guide only and should be scaled to align with individual lab schedules.
      4. Incubate the culture at 37ºC incubator with 5% CO2. Cultures should be monitored daily.

      Subculture guidelines:

      • All seeding densities should be based on cell counts gained by established methods.
      • A guide seeding density of 2x104 cells/cm2 is recommended for confluency (80-90% confluence) within 48 hours.
      • A partial media change 24 hours prior to subculture may be helpful to encourage growth, if required.
      • Cells should be passaged when they have achieved 80-90% confluence.

      Click here to view the Mammalian cell tissue culture protocol

      This product is subject to limited use licenses from The Broad Institute and ERS Genomics Limited, and is developed with patented technology. For full details of the limited use licenses and relevant patents please refer to our limited use license and patent pages.

    Properties

    • Number of cells

      1 x 106 cells/vial, 1 mL
    • Viability

      ~90%
    • Adherent /Suspension

      Adherent
    • Tissue

      Colon
    • Cell type

      epithelial
    • Disease

      Carcinoma
    • Gender

      Male
    • STR Analysis

      Amelogenin X D5S818: 10, 11 D13S317: 10, 12 D7S820: 11, 12 D16S539: 11, 13 vWA: 17, 22 TH01: 8,9 TPOX: 8, 9 CSF1PO: 7, 10
    • Mycoplasma free

      Yes
    • Storage instructions

      Shipped on Dry Ice. Store in liquid nitrogen.
    • Storage buffer

      Constituents: 8.7% DMSO, 2% Cellulose, methyl ether
    • Purity

      Immunogen affinity purified
    • Research areas

      • Epigenetics and Nuclear Signaling
      • Transcription
      • Other factors
      • Epigenetics and Nuclear Signaling
      • Transcription
      • Transcription Factors

    Target

    • Function

      Transcriptional factor that can act as an activator or repressor depending on isoform and/or post-translational modifications. Binds to GT and GC boxes promoter elements. Competes with SP1 for the GC-box promoters. Weak activator of transcription but can activate a number of genes involved in different processes such as cell-cycle regulation, hormone-induction and house-keeping.
    • Tissue specificity

      Ubiquitously expressed.
    • Sequence similarities

      Belongs to the Sp1 C2H2-type zinc-finger protein family.
      Contains 3 C2H2-type zinc fingers.
    • Post-translational
      modifications

      Not glycosylated.
      Acetylated by histone acetyltransferase p300, deacetylated by HDACs. Acetylation/deacetylation states regulate transcriptional activity. Acetylation appears to activate transcription. Alternate sumoylation and acetylation at Lys-551 also control transcriptional activity. Ceramides can also regulate acetylation/deacetylation events through altering the interaction of HDAC with SP3. In vitro, C(18)-ceramides, but not C(16)-ceramides, increase the interaction of HDAC1 with SP3 and enhance the deacetylation of SP3 and the subsequent repression of the TERT promoter.
      Sumoylated on all isoforms. Sumoylated on 2 sites in longer isoforms with Lys-551 being the major site. Sumoylation at this site promotes nuclear localization to the nuclear periphery, nuclear dots and PML nuclear bodies. Sumoylation on Lys-551 represses the transactivation activity, except for the largest isoform, L-Sp3, which has little effect on transactivation. Alternate sumoylation and acetylation at Lys-551 also control transcriptional activity.
    • Cellular localization

      Nucleus. Nucleus > PML body. Localizes to the nuclear periphery and in nuclear dots when sumoylated. Some localization in PML nuclear bodies.
    • Target information above from: UniProt accession Q02447 The UniProt Consortium
      The Universal Protein Resource (UniProt) in 2010
      Nucleic Acids Res. 38:D142-D148 (2010) .

      Information by UniProt

    Images

    • Sanger Sequencing - Human SP3 knockout HCT116 cell line (ab266879)
      Sanger Sequencing - Human SP3 knockout HCT116 cell line (ab266879)
      Homozygous: 14 bp deletion in exon2

    Protocols

    To our knowledge, customised protocols are not required for this product. Please try the standard protocols listed below and let us know how you get on.

    Click here to view the general protocols

    Datasheets and documents

    • Datasheet
    • SDS
  • References (0)

    Publishing research using ab266879? Please let us know so that we can cite the reference in this datasheet.

    ab266879 has not yet been referenced specifically in any publications.

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