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Substrates and chromogens for IHC

Related

  • IHC guide: introduction
    • Tips for experimental design
        • IHC guide: sample prep
          • Tissue fixation, embedding and sectioning
            • Antigen retreival
              • Permeabilization
                • Blocking
                    • IHC guide: immunostaining
                      • Choosing and optimizing primary antibodies
                        • Direct vs indirect
                          • Secondary antibodies for IHC
                            • Chomogenic detection
                              • Substrates and chromogens
                                • Fluorescent detection
                                  • Counterstains and special stains
                                    • Mounting
                                        • IHC guide: troubleshooting
                                            • IHC guide: controls

                                              Chromogens/substrates used in chromogenic IHC are acted on by the reporter enzyme to form a colored precipitate.

                                              The choice of chromogen used is directed by the enzyme employed in the experiment, as well as a number of other factors. Here, we review guidelines for selecting the appropriate enzyme substrate for chromogenic detection.

                                              View DAB substrate kit, AEC substrate kit and the full range of substrate kits for the chromogens listed below. 

                                              Enzyme

                                              Chromogen

                                              Color

                                              Mounting media

                                              Advantages (+) and disadvantages (-)

                                              Horseradish peroxidase (HRP)

                                              AEC

                                              Red

                                              Aqueous

                                              + Intense color, contrasts well with blue in double staining.

                                              Horseradish peroxidase (HRP)

                                              DAB

                                              Brown

                                              Organic

                                              + Intense color; permanent.

                                              Horseradish peroxidase (HRP)

                                              DAB + nickel enhancer

                                              Black

                                              Organic

                                              + Intense color; permanent.

                                              Horseradish peroxidase (HRP)

                                              TMB

                                              Blue

                                              Aqueous

                                              + Intense color; permanent.

                                              Horseradish peroxidase (HRP)

                                              StayYellow

                                              Yellow

                                              Aqueous

                                              + Alternate color useful in multicolor chromogenic IHC

                                              Alkaline phosphatase (AP)

                                              BCIP/NBT

                                              Blue

                                              Organic

                                              + Intense color.

                                              Alkaline phosphatase (AP)

                                              BCIP/TNBT

                                              Purple

                                              Organic

                                              + Intense color.

                                              Alkaline phosphatase (AP)

                                              Naphthol AS-MX phosphate + Fast Blue BB

                                              Blue

                                              Aqueous

                                              + Less intense, good for double staining.

                                              - Fast Blue BB prone to fading.

                                              Alkaline phosphatase (AP)

                                              Naphthol AS-MX phosphate + Fast Red TR

                                              Red

                                              Aqueous

                                              + Less intense, good for double staining.

                                              - Fast Red TR prone to fading.

                                              Alkaline phosphatase (AP)

                                              Naphthol AS-MX phosphate + new fuchsin

                                              Red

                                              Organic

                                              + Intense color.

                                              - Fast Red prone to fading.

                                              Alkaline phosphatase (AP)

                                              StayGreen

                                              Green

                                              Organic

                                              + Alternate color useful in multicolor chromogenic IHC

                                              Glucose oxidase

                                              NBT

                                              Blue

                                              Organic

                                              + No endogenous enzyme activity, so does not suffer from endogenous peroxidases causing false positive staining.

                                              - Low staining intensity. High antibody concentrations needed.

                                              View our full list of chromogens and enhancers here.


                                              ​​>> Next page: Fluorescent immunodetection in IHC

                                              << Previous page: Chromogenic immunodetection in IHC

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