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    products/primary-antibodies/ctcf-antibody-rm1044-ab300639.pdf

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Epigenetics and Nuclear Signaling Transcription Domain Families Zinc Finger
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RecombinantRabMAb

Recombinant Anti-CTCF antibody [RM1044] (ab300639)

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Western blot - Anti-CTCF antibody [RM1044] (AB300639)
  • Western blot - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunohistochemistry (Frozen sections) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunohistochemistry (Frozen sections) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunocytochemistry/ Immunofluorescence - Anti-CTCF antibody [RM1044] (ab300639)
  • Immunocytochemistry/ Immunofluorescence - Anti-CTCF antibody [RM1044] (ab300639)
  • Flow Cytometry (Intracellular) - Anti-CTCF antibody [RM1044] (AB300639)
  • Flow Cytometry (Intracellular) - Anti-CTCF antibody [RM1044] (AB300639)
  • Immunoprecipitation - Anti-CTCF antibody [RM1044] (AB300639)
  • ChIP - Anti-CTCF antibody [RM1044] (AB300639)
  • Anti-CTCF antibody [RM1044] (AB300639)

Key features and details

  • Produced recombinantly (animal-free) for high batch-to-batch consistency and long term security of supply
  • Rabbit recombinant multiclonal [RM1044] to CTCF
  • Suitable for: Flow Cyt (Intra), IHC-P, WB, IHC-Fr, IP, ChIP, ICC/IF
  • Reacts with: Mouse, Rat, Human

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Overview

  • Product name

    Anti-CTCF antibody [RM1044]
    See all CTCF primary antibodies
  • Description

    Rabbit recombinant multiclonal [RM1044] to CTCF
  • Host species

    Rabbit
  • Tested applications

    Suitable for: Flow Cyt (Intra), IHC-P, WB, IHC-Fr, IP, ChIP, ICC/IFmore details
  • Species reactivity

    Reacts with: Mouse, Rat, Human
  • Immunogen

    This product was produced with the following immunogens:
    Synthetic peptide. This information is proprietary to Abcam and/or its suppliers.

    Synthetic peptide. This information is proprietary to Abcam and/or its suppliers.

  • Positive control

    • WB: HeLa , 293T (human embryonic kidney epithelial cell), NIH/3T3 (mouse embryonic fibroblast), RAW 264.7 (mouse Abelson murine leukemia virus-induced tumor macrophage), PC-12 (rat adrenal gland pheochromocytoma), human spleen lysate, mouse spleen and colon lysates. Rat spleen and colon lysates. IHC-P.: Human colon, breast, and breast carcinoma. Mouse and rat colon. IHC-Fr.: Mouse and rat colon. ICC: HeLa, NIH/3T3. Flow cyt. Intra.: HeLa, NIH/3T3. IP: HeLa ChiP: HeLa
  • General notes

    Our RabMAb® technology is a patented hybridoma-based technology for making rabbit monoclonal antibodies. For details on our patents, please refer to RabMAb® patents.

Properties

  • Form

    Liquid
  • Storage instructions

    Shipped at 4°C. Store at +4°C short term (1-2 weeks). Upon delivery aliquot. Store at -20°C long term. Avoid freeze / thaw cycle.
  • Storage buffer

    pH: 7.20
    Preservative: 0.01% Sodium azide
    Constituents: 59% PBS, 40% Glycerol (glycerin, glycerine), 0.05% BSA
  • Concentration information loading...
  • Purity

    Protein A purified
  • Clonality

    Recombinant Multiclonal
  • Clone number

    RM1044
  • Isotype

    IgG
  • Research areas

    • Epigenetics and Nuclear Signaling
    • Transcription
    • Domain Families
    • Zinc Finger
    • Epigenetics and Nuclear Signaling
    • Chromatin Binding Proteins
    • DNA / RNA binding
    • Epigenetics and Nuclear Signaling
    • DNA methylation
    • Methylated DNA Associated

Associated products

  • Alternative Versions

    • Anti-CTCF antibody [RM1044] (BSA and Azide free) (ab300640)
  • Compatible Secondaries

    • VeriBlot for IP Detection Reagent (HRP) (ab131366)
    • Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488) preadsorbed (ab150081)
    • Alexa Fluor® 594 Anti-alpha Tubulin antibody [DM1A] - Microtubule Marker (ab195889)
    • Goat Anti-Rabbit IgG H&L (HRP) (ab97051)
  • Isotype control

    • Rabbit IgG, monoclonal [EPR25A] - Isotype Control (ab172730)

Applications

The Abpromise guarantee

Our Abpromise guarantee covers the use of ab300639 in the following tested applications.

The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user.

Application Abreviews Notes
Flow Cyt (Intra)
1/500.
IHC-P
1/10000. Perform heat mediated antigen retrieval with Tris/EDTA buffer pH 9.0 before commencing with IHC staining protocol.
WB
1/1000. Predicted molecular weight: 83 kDa.
IHC-Fr
1/2000.
IP
1/30.
ChIP
Use a concentration of 5 µg/ml.
ICC/IF
1/50.
Notes
Flow Cyt (Intra)
1/500.
IHC-P
1/10000. Perform heat mediated antigen retrieval with Tris/EDTA buffer pH 9.0 before commencing with IHC staining protocol.
WB
1/1000. Predicted molecular weight: 83 kDa.
IHC-Fr
1/2000.
IP
1/30.
ChIP
Use a concentration of 5 µg/ml.
ICC/IF
1/50.

Target

  • Function

    Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Acts as transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene. Also binds to the PLK and PIM1 promoters. Acts as a transcriptional activator of APP. Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression. Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription. Seems to act as tumor suppressor. Plays a critical role in the epigenetic regulation. Participates to the allele-specific gene expression at the imprinted IGF2/H19 gene locus. On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2. Plays a critical role in gene silencing over considerable distances in the genome. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones. Inversely, binding to target sites is prevented by CpG methylation. Plays a important role in chromatin remodeling. Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping. Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory. Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription. When bound to chromatin, it provides an anchor point for nucleosomes positioning. Seems to be essential for homologous X-chromosome pairing. May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation. May play a role in preventing the propagation of stable methylation at the escape genes from X- inactivation. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. Regulates asynchronous replication of IGF2/H19.
  • Tissue specificity

    Ubiquitous. Absent in primary spermatocytes.
  • Sequence similarities

    Belongs to the CTCF zinc-finger protein family.
    Contains 11 C2H2-type zinc fingers.
  • Domain

    The 11 zinc fingers are highly conserved among vertebrates, exhibiting almost identical amino acid sequences. Different subsets or combination of individual zinc fingers gives the ability to CTCF to recognize multiple DNA target sites.
  • Post-translational
    modifications

    Sumoylated on Lys-74 and Lys-689; sumoylation of CTCF contributes to the repressive function of CTCF on the MYC P2 promoter.
  • Cellular localization

    Nucleus > nucleoplasm. Chromosome. Chromosome > centromere. May translocate to the nucleolus upon cell differentiation. Associates with both centromeres and chromosomal arms during metaphase. Associates with the H19 ICR in mitotic chromosomes. May be preferentially excluded from heterochromatin during interphase.
  • Target information above from: UniProt accession P49711 The UniProt Consortium
    The Universal Protein Resource (UniProt) in 2010
    Nucleic Acids Res. 38:D142-D148 (2010) .

    Information by UniProt
  • Database links

    • Entrez Gene: 10664 Human
    • Entrez Gene: 13018 Mouse
    • Entrez Gene: 83726 Rat
    • Omim: 604167 Human
    • SwissProt: P49711 Human
    • SwissProt: Q61164 Mouse
    • SwissProt: Q9R1D1 Rat
    • Unigene: 368367 Human
    • Unigene: 269474 Mouse
    • Unigene: 18612 Rat
    see all
  • Alternative names

    • 11 zinc finger protein antibody
    • 11 zinc finger transcriptional repressor antibody
    • 11-zinc finger protein antibody
    • CCCTC binding factor (zinc finger protein) antibody
    • CCCTC binding factor antibody
    • CCCTC-binding factor antibody
    • Ctcf antibody
    • CTCF_HUMAN antibody
    • CTCFL paralog antibody
    • MRD21 antibody
    • Transcriptional repressor CTCF antibody
    see all

Images

  • Western blot - Anti-CTCF antibody [RM1044] (AB300639)
    Western blot - Anti-CTCF antibody [RM1044] (AB300639)
    All lanes : Anti-CTCF antibody [RM1044] (ab300639) at 1/1000 dilution

    Lane 1 : HeLa (human cervical adenocarcinoma epithelial cell) whole cell lysate
    Lane 2 : 293T (human embryonic kidney epithelial cell) whole cell lysate
    Lane 3 : NIH/3T3 (mouse embryonic fibroblast) whole cell lysate
    Lane 4 : RAW 264.7 (mouse Abelson murine leukemia virus-induced tumor macrophage) whole cell lysate
    Lane 5 : PC-12 (rat adrenal gland pheochromocytoma) whole cell lysate

    Lysates/proteins at 20 µg per lane.

    Secondary
    All lanes : Goat Anti-Rabbit IgG H&L (HRP) (ab97051) at 1/100000 dilution

    Predicted band size: 83 kDa
    Observed band size: 140, 130,55, 45,97, 80, 73 kDa why is the actual band size different from the predicted?



    Blocking and diluting buffer and concentration: 5% NFDM/TBST. 

    The multiples bands observed in the WB have been reported in literature (PMID: 12878173, PMID: 8246978).

  • Western blot - Anti-CTCF antibody [RM1044] (AB300639)
    Western blot - Anti-CTCF antibody [RM1044] (AB300639)
    All lanes : Anti-CTCF antibody [RM1044] (ab300639) at 1/1000 dilution

    Lane 1 : Human spleen lysate
    Lane 2 : Mouse heart lysate
    Lane 3 : Mouse spleen lysate
    Lane 4 : Mouse colon lysate
    Lane 5 : Rat heart lysate
    Lane 6 : Rat spleen lysate
    Lane 7 : Rat colon lysate

    Lysates/proteins at 20 µg per lane.

    Secondary
    All lanes : Goat Anti-Rabbit IgG H&L (HRP) (ab97051) at 1/100000 dilution

    Predicted band size: 83 kDa
    Observed band size: 140, 130,55, 45,97, 80, 73 kDa why is the actual band size different from the predicted?



    Blocking and diluting buffer and concentration: 5% NFDM/TBST. 

    The multiples bands observed in the WB have been reported in literature (PMID: 12878173, PMID: 8246978).

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)

    Immunohistochemical analysis of paraffin-embedded rat colon tissue labelling CTCF with ab300639 at 1/10000 (0.053 µg/ml) followed by a ready to use LeicaDS9800 (BOND™ Polymer Refine Detection). Nuclear staining on rat colon. The section was incubated with ab300639 for 30 mins at room temperature. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: PBS was used instead of primary antibody followed by ready to use secondary antibody LeicaDS9800 (BOND™ Polymer Refine Detection).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution2) for 20 mins was used. 

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)

    Immunohistochemical analysis of paraffin-embedded mouse colon tissue labelling CTCF with ab300639 at 1/10000 (0.053 µg/ml) followed by a ready to use LeicaDS9800 (BOND™ Polymer Refine Detection). Nuclear staining on mouse colon. The section was incubated with ab300639 for 30 mins at room temperature. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: PBS was used instead of primary antibody followed by ready to use secondary antibody LeicaDS9800 (BOND™ Polymer Refine Detection).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution2) for 20 mins was used. 

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)

    Immunohistochemical analysis of paraffin-embedded human breast carcinoma tissue labelling CTCF with ab300639 at 1/10000 (0.053 µg/ml) followed by a ready to use LeicaDS9800 (BOND™ Polymer Refine Detection). Nuclear staining on  human breast carcinoma is observed. The section was incubated with ab300639 for 30 mins at room temperature. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: PBS was used instead of primary antibody followed by ready to use secondary antibody LeicaDS9800 (BOND™ Polymer Refine Detection).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution2) for 20 mins was used. 

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)

    Immunohistochemical analysis of paraffin-embedded human breast tissue labelling CTCF with ab300639 at 1/10000 (0.053 µg/ml) followed by a ready to use LeicaDS9800 (BOND™ Polymer Refine Detection). Nuclear staining on human breast is observed. The section was incubated with ab300639 for 30 mins at room temperature. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: PBS was used instead of primary antibody followed by ready to use secondary antibody LeicaDS9800 (BOND™ Polymer Refine Detection).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution2) for 20 mins was used. 

  • Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)
    Immunohistochemistry (Formalin/PFA-fixed paraffin-embedded sections) - Anti-CTCF antibody [RM1044] (AB300639)

    Immunohistochemical analysis of paraffin-embedded human colon tissue labelling CTCF with ab300639 at 1/10000 (0.053 µg/ml) followed by a ready to use LeicaDS9800 (BOND™ Polymer Refine Detection). Nuclear staining on human colon is observed. The section was incubated with ab300639 for 30 mins at room temperature. The immunostaining was performed on a Leica Biosystems BOND® RX instrument. Counterstained with Hematoxylin.

    Secondary antibody only control: PBS was used instead of primary antibody followed by ready to use secondary antibody LeicaDS9800 (BOND™ Polymer Refine Detection).

    Heat mediated antigen retrieval with Tris-EDTA buffer (pH 9.0, epitope retrieval solution2) for 20 mins was used. 

  • Immunohistochemistry (Frozen sections) - Anti-CTCF antibody [RM1044] (AB300639)
    Immunohistochemistry (Frozen sections) - Anti-CTCF antibody [RM1044] (AB300639)

    Immunohistochemical analysis of 4% PFA-fixed, 0.2% Triton X-100 permeabilized frozen mouse colon (fresh) tissue labeling CCTF with ab300639 at 1/2000 dilution (0.266 µg/ml)  followed by ab150081 Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488) preabsorbed at 1/1000 dilution (2 µg/mL) (Green). Positive staining on mouse colon is observed. The nuclear counterstain was DAPI (Blue).

  • Immunohistochemistry (Frozen sections) - Anti-CTCF antibody [RM1044] (AB300639)
    Immunohistochemistry (Frozen sections) - Anti-CTCF antibody [RM1044] (AB300639)

    Immunohistochemical analysis of 4% PFA-fixed, 0.2% Triton X-100 permeabilized frozen rat colon (fresh) tissue labeling CCTF with ab300639 at 1/2000 dilution (0.266 µg/ml)  followed by ab150081 Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488) preabsorbed at 1/1000 dilution (2 µg/mL) (Green). Positive staining on rat colon is observed. The nuclear counterstain was DAPI (Blue).

  • Immunocytochemistry/ Immunofluorescence - Anti-CTCF antibody [RM1044] (ab300639)
    Immunocytochemistry/ Immunofluorescence - Anti-CTCF antibody [RM1044] (ab300639)

    Immunofluorescent analysis of 4% paraformaldehyde fixed and 0.1% TritonX-100 permeabilized HeLa (human cervix adenocarcinoma epithelial cell) labeling CTCF with ab300639 at 1/2000 dilution (0.266 μg/ml), followed by ab150081 Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488, Green) preadsorbed at 1:1000 (2 μg/mL). Confocal image showing nuclear staining in HeLa cell line. 

    Ab195889 anti-alpha Tubulin mouse monoclonal antibody - Microtubule Marker (Alexa Fluor® 594) (Red) was used as a counterstain at 1:200 dilution (2.5 μg/ml). Nuclear counter satin is DAPI. 

  • Immunocytochemistry/ Immunofluorescence - Anti-CTCF antibody [RM1044] (ab300639)
    Immunocytochemistry/ Immunofluorescence - Anti-CTCF antibody [RM1044] (ab300639)

    Immunofluorescent analysis of 4% paraformaldehyde fixed and 0.1% TritonX-100 permeabilized NIH/3T3 (mouse embryonic fibroblast) cells labeling CTCF with ab300639 at 1/2000 dilution (0.266 μg/ml), followed by ab150081 Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488, Green) preadsorbed at 1:1000 (2 μg/mL). Confocal image showing nuclear staining in NIH/3T3 cell line. 

    Ab195889 anti-alpha Tubulin mouse monoclonal antibody - Microtubule Marker (Alexa Fluor® 594) (Red) was used as a counterstain at 1:200 dilution (2.5 μg/ml). Nuclear counter satin is DAPI. 

  • Flow Cytometry (Intracellular) - Anti-CTCF antibody [RM1044] (AB300639)
    Flow Cytometry (Intracellular) - Anti-CTCF antibody [RM1044] (AB300639)

    Intracellular flow cytometric analysis of 4% paraformaldehyde fixed and 90% methanol permeabilized HeLa (human cervix adenocarcinoma epithelial cell) cells labelling CTCF with ab300639 at 1/500 dilution (0.1µg) (Red) compared with a Rabbit monoclonal IgG (ab172730) (Black) isotype control and an unlabelled control (cells without incubation with primary antibody and secondary antibody) (Blue). Goat Anti-Rabbit IgG (Alexa Fluor® 488, ab150081) at 1/2000 dilution was used as the secondary antibody.

  • Flow Cytometry (Intracellular) - Anti-CTCF antibody [RM1044] (AB300639)
    Flow Cytometry (Intracellular) - Anti-CTCF antibody [RM1044] (AB300639)

    Intracellular flow cytometric analysis of 4% paraformaldehyde fixed and 90% methanol permeabilized NIH/3T3 (mouse embryonic fibroblast) cells labelling CTCF with ab300639 at 1/500 dilution (0.1µg) (Red) compared with a Rabbit monoclonal IgG (ab172730) (Black) isotype control and an unlabelled control (cells without incubation with primary antibody and secondary antibody) (Blue). Goat Anti-Rabbit IgG (Alexa Fluor® 488, ab150081) at 1/2000 dilution was used as the secondary antibody.

  • Immunoprecipitation - Anti-CTCF antibody [RM1044] (AB300639)
    Immunoprecipitation - Anti-CTCF antibody [RM1044] (AB300639)

    CTCF was immunoprecipitated from 0.35 mg HeLa (human cervical adenocarcinoma epithelial cell) whole cell lysat with ab300639 at 1/30 dilution (2µg in 0.35 mg lysates). Western blot was performed on the immunoprecipitate using ab300639 at 1/1000 dilution. VeriBlot for IP secondary antibody(HRP)(ab131366) was used at 1/5000 dilution.

    Lane 1: HeLa (human cervical adenocarcinoma epithelial cell) whole cell lysate 10 μg (Input)

    Lane 2: ab300639 IP in HeLa whole cell lysate

    Lane 3: Rabbit monoclonal IgG (ab172730) instead of ab300639 in HeLa whole cell lysate

    Blocking and dilution buffer and concentration: 5% NFDM/TBST.

    Exposure time: 10 seconds. 

    Observed MW (kDa): 40, 130, 97, 80, 73, 55, 45. 

  • ChIP - Anti-CTCF antibody [RM1044] (AB300639)
    ChIP - Anti-CTCF antibody [RM1044] (AB300639)

    Chromatin was prepared from HeLa cells according to the Abcam Dual-X-ChIP protocol*. Cells were fixed with 1.5 mM EGS for 30mins and then formaldehyde for 10min.
    The ChIP was performed with 25 µg of chromatin, 5 µg of ab300639(red), or 5 µg of rabbit normal IgG ab172730 (gray) and 25 µl of Protein A/G Dynabeads. The immunoprecipitated DNA was quantified by real time PCR (Sybr green approach).
    *http://www.abcam.com/resources?keywords=X%20ChIP%20protocol. 

  • Anti-CTCF antibody [RM1044] (AB300639)
    Anti-CTCF antibody [RM1044] (AB300639)

Protocols

To our knowledge, customised protocols are not required for this product. Please try the standard protocols listed below and let us know how you get on.

Click here to view the general protocols

Datasheets and documents

  • SDS download

  • Datasheet download

    Download

References (0)

Publishing research using ab300639? Please let us know so that we can cite the reference in this datasheet.

ab300639 has not yet been referenced specifically in any publications.

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