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Fusion tags are known proteins or peptides that are fused onto your protein of interest.
From determining the best application to identifying common issues, our guide will help you make the most of your bench time.
Sections in our guide:
|Introduction to fusion tags||Explore what fusion tags are|
|Tandem affinity purification and tag cleavage||Discover how to use multiple tags and to remove tags after detection|
|Affinity tags||Purifying a protein? Visit this page.|
|Epitope tags||Often used for protein localization and expression|
|Fluorescent tags||Useful if you need to use tags in live cells|
|Detecting your protein and applications||Fusion tags can be used in many applications. Find out how they can enhance your research.|
There are many reasons to highlight a protein of interest: perhaps you want to observe its cellular localization or purify it for crystallization. Although there are commercially available antibodies for many proteins, sometimes it can be difficult to create a specific antibody against a target. To overcome these problems, scientists have developed an extensive molecular toolbox of fusion tags.
A fusion tag is a known protein or peptide that is fused onto your protein of interest. As these tags are well characterized there is a wide range of top-performing antibodies available, enabling easy detection of a specific protein for a variety of applications. Attaching the known sequence to your protein is most commonly achieved by using recombinant DNA, where the DNA of your protein of interest is incorporated into a plasmid containing the fusion tag sequence. When this plasmid is expressed, the fusion tag will be attached to the protein [Figure 1].
Apart from which tag to use, the linker sequence should also be considered carefully. The linker sequence joins your protein to the tag and is important to ensure correct protein folding and function. Linker sequences can be rigid, flexible or cleavable and, like fusions tags, each sequence has distinctive properties1 .
Figure 1: First, insert both the DNA of your protein of interest and fusion tag into a plasmid. This is then transcribed and translated to create your protein of interest attached to the fusion tag.
There are three main categories of fusion tags that are used for different applications: epitope tags, affinity tags, and fluorescent tags.
Epitope tags tend to be short peptide sequences that can be used for immunological applications, such as western blot and co-immunoprecipitation.
Affinity tags are generally longer and are used for protein purification or increasing protein solubility.
Fluorescent tags can be used in both live and dead cells and are largely used for imaging studies, such as cellular localization and co-expression experiments.
Whether you choose to fuse your tag to the C or N terminal of your protein of interest largely depends on the protein itself: how it folds and whether the terminus you choose has a functional requirement or not. For example, if the C-terminal is folded inside the protein, you’re unlikely to receive any fusion protein signal; or if your protein is post-translationally cleaved at the terminal your tag is fused to, then your tag will be removed from your protein of interest.
If you have the resources or your experiment is novel, it might be best to clone both C- and N-terminally tagged constructs to determine the best option. One research group found that more C-terminal fusion proteins localize to the intended subcellular compartment than N-terminally tagged fusion proteins 2. However, it is important to stress that while C-terminally tagged proteins tend to localize and behave as expected, this is not always possible to predict. Immunofluorescence can be used to check that the fusion protein localizes correctly; an immunoblot will help to confirm the fusion protein is the correct size and expressed at the expected levels, and co-immunoprecipitation can help to assess how the fusion protein interacts with known substrates3.
If you would like to discover more, see our pages on:
If you are considering utilizing more than one application or need to remove your tag, read more about tandem affinity purification and tag cleavage.
If you would like to learn more about how to detect your tag, visit our detection and applications page.
Is there a specific tag I should be using?
Unfortunately, there is no definitive answer for which tag or fusion location will be best for your experiment. We recommend using the information in our guide to choose a starting point depending on your target and application4.
Ask yourself key questions:
I need to view my protein in live cells. Which tag should I use?
If you want to view your protein in live cells, use fluorescent tags. There are a wide variety of fluorescent tags available, which enables the detection of multiple proteins if desired. View our page on fluorescent tags to find out more.
I want to see where my protein is localized. Which tag should I use?
High-quality primary antibodies are available against many tags but epitope tags are often used. Read our page on epitope tags to find out more.
What tag is best for purification?
Although many tags are available for purification, affinity tags are most commonly used. Read our page on affinity tags to find out which one best suits your application.
What should I do if my tag is not working?
If you do not achieve optimal results at first, try varying the location of your tag, change or add a protease site, modify the linker sequence or attach multiple tags to take advantage of each tag’s properties. Additionally, novel tags are constantly being developed. These new tags are sometimes established for a specific purpose or they aim to build upon specific properties of existing tags.
Where can I find the molecular weight of common tags?
|GST||211 amino acids|
|Strep-tag||WSHPQFEK or AWAHPQPGG|
|DDDK, or Flag® (Sigma)||DYKDDDK|
|Glu-Glu||EYMPME or EFMPME|